{
  "_id": "6a104053acfb0bcc41c9d124",
  "Package": "TropFishR",
  "Type": "Package",
  "Title": "Tropical Fisheries Analysis",
  "Version": "1.6.5",
  "Date": "2024-10-21",
  "Author": "Tobias K. Mildenberger, Marc H. Taylor, Matthias Wolff",
  "Maintainer": "Tobias K. Mildenberger <t.k.mildenberger@gmail.com>",
  "LazyData": "true",
  "Description": "A compilation of fish stock assessment methods for the\nanalysis of length-frequency data in the context of data-poor\nfisheries. Includes methods and examples included in the FAO\nManual by P. Sparre and S.C. Venema (1998), \"Introduction to\ntropical fish stock assessment\"\n(<http://www.fao.org/documents/card/en/c/9bb12a06-2f05-5dcb-a6ca-2d6dd3080f65/>),\nas well as other more recent methods.",
  "License": "GPL-3",
  "NeedsCompilation": "no",
  "BugReports": "https://github.com/tokami/TropFishR/issues",
  "URL": "https://github.com/tokami/TropFishR",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "libgsl0-dev libhdf5-dev libicu-dev",
  "Repository": "https://tokami.r-universe.dev",
  "Date/Publication": "2025-12-12 07:27:56 UTC",
  "RemoteUrl": "https://github.com/tokami/tropfishr",
  "RemoteRef": "HEAD",
  "RemoteSha": "2a3490fc05cf76c166eed85a800b810ec725896c",
  "Packaged": {
    "Date": "2026-05-11 08:19:34 UTC",
    "User": "root"
  },
  "MD5sum": "7f62c63e59e492d9afc045a27c1432ba",
  "_user": "tokami",
  "_type": "src",
  "_file": "TropFishR_1.6.5.tar.gz",
  "_fileid": "db4923f24b75ea2258e475b7d4e3b39a112a55a0c458e435aba460664051b744",
  "_filesize": 2961525,
  "_sha256": "db4923f24b75ea2258e475b7d4e3b39a112a55a0c458e435aba460664051b744",
  "_created": "2026-05-11T08:19:34.000Z",
  "_published": "2026-05-22T11:38:59.700Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77372039462,
      "time": 212,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "6913618232"
    },
    {
      "job": 77372039592,
      "time": 182,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "6913610439"
    },
    {
      "job": 77372039684,
      "time": 197,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "6913604987"
    },
    {
      "job": 77372039531,
      "time": 226,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "6913610730"
    },
    {
      "job": 77372038855,
      "time": 457,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6913546940"
    },
    {
      "job": 77372038887,
      "time": 111,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7159582873"
    },
    {
      "job": 77372039315,
      "time": 158,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "6913600795"
    },
    {
      "job": 77372039287,
      "time": 163,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "6913602604"
    },
    {
      "job": 77372039493,
      "time": 141,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "6913595166"
    }
  ],
  "_buildurl": "https://github.com/r-universe/tokami/actions/runs/25658324434",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/tokami/tropfishr",
  "_commit": {
    "id": "2a3490fc05cf76c166eed85a800b810ec725896c",
    "author": "Marc Taylor <marchtaylor@gmail.com>",
    "committer": "Marc Taylor <marchtaylor@gmail.com>",
    "message": "working folder not synced\n",
    "time": 1765524476
  },
  "_maintainer": {
    "name": "Tobias K. Mildenberger",
    "email": "t.k.mildenberger@gmail.com",
    "login": "tokami",
    "orcid": "0000-0002-6631-7524",
    "uuid": 14937508
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.0.0",
      "role": "Depends"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "msm",
      "role": "Imports"
    },
    {
      "package": "reshape2",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "GenSA",
      "role": "Imports"
    },
    {
      "package": "GA",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "propagate",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "doParallel",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Suggests"
    },
    {
      "package": "grDevices",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "plyr",
      "role": "Suggests"
    }
  ],
  "_owner": "tokami",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-50",
      "n": 1
    }
  ],
  "_tags": [],
  "_topics": [
    "assessment",
    "fao-manual",
    "fish",
    "fish-stocks"
  ],
  "_stars": 30,
  "_contributors": [
    {
      "user": "tokami",
      "count": 556,
      "uuid": 14937508
    },
    {
      "user": "marchtaylor",
      "count": 97,
      "uuid": 8147731
    },
    {
      "user": "alko989",
      "count": 3,
      "uuid": 3840557
    }
  ],
  "_userbio": {
    "uuid": 14937508,
    "type": "user",
    "name": "Tobias Mildenberger",
    "description": "I am interested in the processes governing the stability, diversity and productivity of marine fish communities and their implication on sustainable management."
  },
  "_downloads": {
    "count": 1019,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/TropFishR"
  },
  "_mentions": 3,
  "_devurl": "https://github.com/tokami/tropfishr",
  "_searchresults": 150,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/TropFishR.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/tokami/tropfishr",
  "_realowner": "tokami",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1",
      "date": "2016-07-02"
    },
    {
      "version": "1.0.0",
      "date": "2016-09-09"
    },
    {
      "version": "1.0.2",
      "date": "2016-12-30"
    },
    {
      "version": "1.1",
      "date": "2017-02-26"
    },
    {
      "version": "1.1.3",
      "date": "2017-04-05"
    },
    {
      "version": "1.1.4",
      "date": "2017-07-12"
    },
    {
      "version": "1.2",
      "date": "2017-12-13"
    },
    {
      "version": "1.2.1",
      "date": "2018-01-08"
    },
    {
      "version": "1.6.0",
      "date": "2018-06-26"
    },
    {
      "version": "1.6.1",
      "date": "2019-01-17"
    },
    {
      "version": "1.6.2",
      "date": "2020-01-28"
    },
    {
      "version": "1.6.3",
      "date": "2021-10-04"
    },
    {
      "version": "1.6.4",
      "date": "2024-03-01"
    },
    {
      "version": "1.6.5",
      "date": "2024-10-31"
    },
    {
      "version": "1.6.6",
      "date": "2025-05-01"
    }
  ],
  "_exports": [
    "Bhattacharya",
    "catchCurve",
    "date2yeardec",
    "ELEFAN",
    "ELEFAN_GA",
    "ELEFAN_SA",
    "gillnetfit",
    "growth_length_age",
    "growth_tagging",
    "lfqCreate",
    "lfqFitCurves",
    "lfqModify",
    "lfqRestructure",
    "M_empirical",
    "powell_wetherall",
    "predict_mod",
    "prod_mod",
    "prod_mod_ts",
    "recruitment",
    "select",
    "select_Millar",
    "select_ogive",
    "startingPoint2tanchor",
    "stock_sim",
    "VBGF",
    "VPA",
    "yeardec2date",
    "Z_BevertonHolt",
    "Z_CPUE"
  ],
  "_datasets": [
    {
      "name": "alba",
      "title": "Length-frequency data of the clam Abra alba",
      "object": "alba",
      "class": [
        "lfq"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "bream",
      "title": "bream data",
      "object": "bream",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "emperor",
      "title": "Emperor data",
      "object": "emperor",
      "class": [
        "data.frame"
      ],
      "fields": [
        "year",
        "Y",
        "CPUE"
      ],
      "rows": 16,
      "table": true,
      "tojson": true
    },
    {
      "name": "gillnet",
      "title": "Gillnet data",
      "object": "gillnet",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "goatfish",
      "title": "Yellowstriped goatfish data",
      "object": "goatfish",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "haddock",
      "title": "Haddock data",
      "object": "haddock",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "hake",
      "title": "Hake data",
      "object": "hake",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "shrimps",
      "title": "Shrimp data",
      "object": "shrimps",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "synCAA1",
      "title": "Synthetic Catch-at-age data I",
      "object": "synCAA1",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "synCAA2",
      "title": "Synthetic Catch-at-age data II",
      "object": "synCAA2",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    },
    {
      "name": "synCPUE",
      "title": "Synthetical catch per unit of effort (CPUE) dataset",
      "object": "synCPUE",
      "class": [
        "data.frame"
      ],
      "fields": [
        "cohort",
        "age",
        "CPUE"
      ],
      "rows": 6,
      "table": true,
      "tojson": true
    },
    {
      "name": "synLFQ1",
      "title": "Synthetic length-frequency data I",
      "object": "synLFQ1",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "synLFQ2",
      "title": "Synthetic length frequency data II",
      "object": "synLFQ2",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "synLFQ3",
      "title": "Synthetic length frequency data III",
      "object": "synLFQ3",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "synLFQ4",
      "title": "Synthetic length-frequency data IV (with seasonal oscillation)",
      "object": "synLFQ4",
      "class": [
        "lfq"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "synLFQ5",
      "title": "Synthetic length-frequency data V (without seasonal oscillation)",
      "object": "synLFQ5",
      "class": [
        "lfq"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "synLFQ6",
      "title": "Synthetic length-frequency data VI (without seasonal oscillation)",
      "object": "synLFQ6",
      "class": [
        "lfq"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "synLFQ7",
      "title": "Synthetic length-frequency data VII with seasonal oscillation",
      "object": "synLFQ7",
      "class": [
        "lfq"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "synLFQ8",
      "title": "Synthetic length-frequency data VIII with variable harvest rate",
      "object": "synLFQ8",
      "class": [
        "lfq"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "tilapia",
      "title": "Tilapia data",
      "object": "tilapia",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "trammelnet",
      "title": "Trammel net data",
      "object": "trammelnet",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "trawl_fishery_Java",
      "title": "Data from the trawl fishery off the North coast of Java",
      "object": "trawl_fishery_Java",
      "class": [
        "data.frame"
      ],
      "fields": [
        "year",
        "Y",
        "f"
      ],
      "rows": 9,
      "table": true,
      "tojson": true
    },
    {
      "name": "whiting",
      "title": "Whiting data",
      "object": "whiting",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "alba",
      "title": "Length-frequency data of the clam Abra alba",
      "topics": [
        "alba"
      ]
    },
    {
      "page": "Bhattacharya",
      "title": "Bhattacharya's method",
      "topics": [
        "Bhattacharya"
      ]
    },
    {
      "page": "bream",
      "title": "bream data",
      "topics": [
        "bream"
      ]
    },
    {
      "page": "catchCurve",
      "title": "Catch curve",
      "topics": [
        "catchCurve"
      ]
    },
    {
      "page": "date2yeardec",
      "title": "Date - Year conversion",
      "topics": [
        "date2yeardec"
      ]
    },
    {
      "page": "ELEFAN",
      "title": "ELEFAN",
      "topics": [
        "ELEFAN"
      ]
    },
    {
      "page": "ELEFAN_GA",
      "title": "ELEFAN_GA",
      "topics": [
        "ELEFAN_GA"
      ]
    },
    {
      "page": "ELEFAN_SA",
      "title": "ELEFAN_SA",
      "topics": [
        "ELEFAN_SA"
      ]
    },
    {
      "page": "emperor",
      "title": "Emperor data",
      "topics": [
        "emperor"
      ]
    },
    {
      "page": "gillnet",
      "title": "Gillnet data",
      "topics": [
        "gillnet"
      ]
    },
    {
      "page": "gillnetfit",
      "title": "Millar's original gillnet selectivity fitting function",
      "topics": [
        "gillnetfit"
      ]
    },
    {
      "page": "goatfish",
      "title": "Yellowstriped goatfish data",
      "topics": [
        "goatfish"
      ]
    },
    {
      "page": "growth_length_age",
      "title": "Estimation of growth parameter using length-at-age data",
      "topics": [
        "growth_length_age"
      ]
    },
    {
      "page": "growth_tagging",
      "title": "Growth from tagging data",
      "topics": [
        "growth_tagging"
      ]
    },
    {
      "page": "haddock",
      "title": "Haddock data",
      "topics": [
        "haddock"
      ]
    },
    {
      "page": "hake",
      "title": "Hake data",
      "topics": [
        "hake"
      ]
    },
    {
      "page": "lfqCreate",
      "title": "Create lfq data from length measurements",
      "topics": [
        "lfqCreate"
      ]
    },
    {
      "page": "lfqFitCurves",
      "title": "Fitting VBGF growth curves through lfq data",
      "topics": [
        "lfqFitCurves"
      ]
    },
    {
      "page": "lfqModify",
      "title": "Modify lfq data for further analysis",
      "topics": [
        "lfqModify"
      ]
    },
    {
      "page": "lfqRestructure",
      "title": "Restructuring of length frequency data",
      "topics": [
        "lfqRestructure"
      ]
    },
    {
      "page": "M_empirical",
      "title": "Empirical formulas for the estimation of natural mortality",
      "topics": [
        "M_empirical"
      ]
    },
    {
      "page": "plot.Bhattacharya",
      "title": "Bhattacharya plot",
      "topics": [
        "plot.Bhattacharya"
      ]
    },
    {
      "page": "plot.catchCurve",
      "title": "Plotting catch curve",
      "topics": [
        "plot.catchCurve"
      ]
    },
    {
      "page": "plot.lfq",
      "title": "Plotting of length frequency data (with VBGF curves)",
      "topics": [
        "plot.lfq"
      ]
    },
    {
      "page": "plot.predict_mod",
      "title": "Plotting prediction models yield per recruit and Thompson & Bell",
      "topics": [
        "plot.predict_mod"
      ]
    },
    {
      "page": "plot.prod_mod",
      "title": "Plotting production models",
      "topics": [
        "plot.prod_mod"
      ]
    },
    {
      "page": "plot.prod_mod_ts",
      "title": "Plotting time series production models",
      "topics": [
        "plot.prod_mod_ts"
      ]
    },
    {
      "page": "plot.recruitment",
      "title": "Plot of recruitment patterns",
      "topics": [
        "plot.recruitment"
      ]
    },
    {
      "page": "plot.select",
      "title": "Selectivity plot",
      "topics": [
        "plot.select"
      ]
    },
    {
      "page": "plot.select_Millar",
      "title": "Millar's selectivity plot",
      "topics": [
        "plot.select_Millar"
      ]
    },
    {
      "page": "plot.VPA",
      "title": "VPA plot",
      "topics": [
        "plot.VPA"
      ]
    },
    {
      "page": "powell_wetherall",
      "title": "Powell-Wetherall method",
      "topics": [
        "powell_wetherall"
      ]
    },
    {
      "page": "predict_mod",
      "title": "Prediction models",
      "topics": [
        "predict_mod"
      ]
    },
    {
      "page": "prod_mod",
      "title": "Production models",
      "topics": [
        "prod_mod"
      ]
    },
    {
      "page": "prod_mod_ts",
      "title": "Production models with time series fitting",
      "topics": [
        "prod_mod_ts"
      ]
    },
    {
      "page": "rcurves_Millar",
      "title": "Predict gillnet selectivity (old Millar method)",
      "topics": [
        "rcurves_Millar"
      ]
    },
    {
      "page": "recruitment",
      "title": "Recruitment patterns",
      "topics": [
        "recruitment"
      ]
    },
    {
      "page": "rtypes_Millar",
      "title": "Millar's selectivity types",
      "topics": [
        "rtypes_Millar"
      ]
    },
    {
      "page": "select",
      "title": "Selectivity model",
      "topics": [
        "select"
      ]
    },
    {
      "page": "select_Millar",
      "title": "Millar's selectivity model",
      "topics": [
        "select_Millar"
      ]
    },
    {
      "page": "select_ogive",
      "title": "Selectivity patterns",
      "topics": [
        "select_ogive"
      ]
    },
    {
      "page": "shrimps",
      "title": "Shrimp data",
      "topics": [
        "shrimps"
      ]
    },
    {
      "page": "startingPoint2tanchor",
      "title": "Convert FiSAT's starting point to t_anchor value",
      "topics": [
        "startingPoint2tanchor"
      ]
    },
    {
      "page": "stock_sim",
      "title": "Stock simulation",
      "topics": [
        "stock_sim"
      ]
    },
    {
      "page": "synCAA1",
      "title": "Synthetic Catch-at-age data I",
      "topics": [
        "synCAA1"
      ]
    },
    {
      "page": "synCAA2",
      "title": "Synthetic Catch-at-age data II",
      "topics": [
        "synCAA2"
      ]
    },
    {
      "page": "synCPUE",
      "title": "Synthetical catch per unit of effort (CPUE) dataset",
      "topics": [
        "synCPUE"
      ]
    },
    {
      "page": "synLFQ1",
      "title": "Synthetic length-frequency data I",
      "topics": [
        "synLFQ1"
      ]
    },
    {
      "page": "synLFQ2",
      "title": "Synthetic length frequency data II",
      "topics": [
        "synLFQ2"
      ]
    },
    {
      "page": "synLFQ3",
      "title": "Synthetic length frequency data III",
      "topics": [
        "synLFQ3"
      ]
    },
    {
      "page": "synLFQ4",
      "title": "Synthetic length-frequency data IV (with seasonal oscillation)",
      "topics": [
        "synLFQ4"
      ]
    },
    {
      "page": "synLFQ5",
      "title": "Synthetic length-frequency data V (without seasonal oscillation)",
      "topics": [
        "synLFQ5"
      ]
    },
    {
      "page": "synLFQ6",
      "title": "Synthetic length-frequency data VI (without seasonal oscillation)",
      "topics": [
        "synLFQ6"
      ]
    },
    {
      "page": "synLFQ7",
      "title": "Synthetic length-frequency data VII with seasonal oscillation",
      "topics": [
        "synLFQ7"
      ]
    },
    {
      "page": "synLFQ8",
      "title": "Synthetic length-frequency data VIII with variable harvest rate",
      "topics": [
        "synLFQ8"
      ]
    },
    {
      "page": "tilapia",
      "title": "Tilapia data",
      "topics": [
        "tilapia"
      ]
    },
    {
      "page": "trammelnet",
      "title": "Trammel net data",
      "topics": [
        "trammelnet"
      ]
    },
    {
      "page": "trawl_fishery_Java",
      "title": "Data from the trawl fishery off the North coast of Java",
      "topics": [
        "trawl_fishery_Java"
      ]
    },
    {
      "page": "VBGF",
      "title": "Von Bertalanffy Growth function (VBGF)",
      "topics": [
        "VBGF"
      ]
    },
    {
      "page": "VPA",
      "title": "Virtual Population Analysis (VPA)",
      "topics": [
        "VPA"
      ]
    },
    {
      "page": "whiting",
      "title": "Whiting data",
      "topics": [
        "whiting"
      ]
    },
    {
      "page": "yeardec2date",
      "title": "Year - Date conversion",
      "topics": [
        "yeardec2date"
      ]
    },
    {
      "page": "ypr",
      "title": "Yield per recruit",
      "topics": [
        "ypr"
      ]
    },
    {
      "page": "ypr_sel",
      "title": "Yield per recruit with selection ogive",
      "topics": [
        "ypr_sel"
      ]
    },
    {
      "page": "Z_BevertonHolt",
      "title": "Beverton & Holt's Z-Equations",
      "topics": [
        "Z_BevertonHolt"
      ]
    },
    {
      "page": "Z_CPUE",
      "title": "Estimate Z from CPUE data",
      "topics": [
        "Z_CPUE"
      ]
    }
  ],
  "_readme": "https://github.com/tokami/tropfishr/raw/HEAD/README.md",
  "_rundeps": [
    "ADGofTest",
    "bit",
    "bit64",
    "cli",
    "cluster",
    "codetools",
    "colorspace",
    "copula",
    "crayon",
    "doParallel",
    "expm",
    "foreach",
    "GA",
    "generics",
    "GenSA",
    "glue",
    "gsl",
    "hdf5r",
    "iterators",
    "lattice",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "minpack.lm",
    "msm",
    "mvtnorm",
    "numDeriv",
    "pcaPP",
    "pillar",
    "pkgconfig",
    "plyr",
    "propagate",
    "pspline",
    "R6",
    "Rcpp",
    "RcppArmadillo",
    "reshape2",
    "rlang",
    "stabledist",
    "stringi",
    "stringr",
    "survival",
    "tibble",
    "utf8",
    "vctrs"
  ],
  "_vignettes": [
    {
      "source": "Using_TropFishR_ELEFAN_functions.Rmd",
      "filename": "Using_TropFishR_ELEFAN_functions.html",
      "title": "Using the TropFishR ELEFAN functions",
      "author": "Marc H. Taylor",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Length-frequency data preparation",
        "The ELEFAN approach",
        "Data restructuring",
        "Scoring of VGBF parameter combinations",
        "Restricting the VBGF parameter search range",
        "Asymptotic length (Linf)",
        "Growth constant (K)",
        "Response surface analysis (RSA)",
        "Refined searches using optimization algorithms",
        "Simulated annealing (ELEFAN_SA)",
        "Genetic algorithm (ELEFAN_GA)",
        "Seasonally-oscillating growth",
        "alba",
        "A synthetic example",
        "Variable mutation probability",
        "Best practices",
        "References"
      ],
      "created": "2017-12-18 13:58:07",
      "modified": "2021-08-30 09:29:56",
      "commits": 6
    },
    {
      "source": "lfqData.Rmd",
      "filename": "lfqData.html",
      "title": "Length-frequency data for TropFishR",
      "author": "Tobias K. Mildenberger",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Background",
        "LFQ import",
        "Data arrangement 1",
        "Data arrangement 2",
        "Data arrangement 3",
        "Other file formats",
        "Conclusion"
      ],
      "created": "2017-09-21 23:05:53",
      "modified": "2021-10-03 17:02:39",
      "commits": 6
    },
    {
      "source": "tutorial.Rmd",
      "filename": "tutorial.html",
      "title": "Single-species fish stock assessment with TropFishR",
      "author": "Tobias K. Mildenberger",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installing TropFishR",
        "Biological stock characteristics",
        "Growth parameters",
        "Natural mortality rate",
        "Fishing mortality rates and gear selectivity",
        "Stock status",
        "Exploitation rate",
        "Yield per recruit modelling",
        "Summary",
        "References"
      ],
      "created": "2017-02-05 18:57:35",
      "modified": "2021-08-30 09:29:56",
      "commits": 22
    }
  ],
  "_score": 7.615629207221096,
  "_indexed": true,
  "_nocasepkg": "tropfishr",
  "_universes": [
    "tokami"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.6.5",
      "date": "2026-05-11T08:22:17.000Z",
      "distro": "noble",
      "commit": "2a3490fc05cf76c166eed85a800b810ec725896c",
      "fileid": "5f1963455f59c0ed134276e56a73ca6c18c5a9d7497765a38bf15ef7258444f8",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/tokami/actions/runs/25658324434"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.6.5",
      "date": "2026-05-11T08:22:05.000Z",
      "distro": "noble",
      "commit": "2a3490fc05cf76c166eed85a800b810ec725896c",
      "fileid": "e724365774eef346a97ae277c9142e3859c62ec1aa3352ba60dd393bb9e43763",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/tokami/actions/runs/25658324434"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.6.5",
      "date": "2026-05-11T08:22:09.000Z",
      "commit": "2a3490fc05cf76c166eed85a800b810ec725896c",
      "fileid": "e4a83860e083ff2f07e9ae02962d7b6c148ff88b78b3212cb1fdf5b7eb9b7c63",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/tokami/actions/runs/25658324434"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.6.5",
      "date": "2026-05-11T08:22:07.000Z",
      "commit": "2a3490fc05cf76c166eed85a800b810ec725896c",
      "fileid": "6e8b1a6997f6ea85c8250ba4efd79fbbb2412e13c01ed55248c09b0e7312fd1a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/tokami/actions/runs/25658324434"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.6.5",
      "date": "2026-05-11T08:21:18.000Z",
      "commit": "2a3490fc05cf76c166eed85a800b810ec725896c",
      "fileid": "8a903ce3001166e127776ecf9b5538d0888d200451158890c64298205df08ec9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/tokami/actions/runs/25658324434"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.6.5",
      "date": "2026-05-11T08:21:26.000Z",
      "commit": "2a3490fc05cf76c166eed85a800b810ec725896c",
      "fileid": "d792f408932370a6f750b4f8de630f5f3355cf9ccb8b961cbfa3a87fee713ccb",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/tokami/actions/runs/25658324434"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.6.5",
      "date": "2026-05-11T08:21:07.000Z",
      "commit": "2a3490fc05cf76c166eed85a800b810ec725896c",
      "fileid": "e1fc6990fb59d24bb9f40e32a011be7edbd6f4aa2c9658bd38e71c1a4b2ebb04",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/tokami/actions/runs/25658324434"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.6.5",
      "date": "2026-05-22T11:38:40.000Z",
      "commit": "2a3490fc05cf76c166eed85a800b810ec725896c",
      "fileid": "4d750373c5616271ff45a3430f96f18118c9b7b1b1d75d953d3c81bdf574fbc5",
      "status": "success",
      "buildurl": "https://github.com/r-universe/tokami/actions/runs/25658324434"
    }
  ]
}